rs52450030 SNP Detail

Summary

• ID
  rs52450030
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141262761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CCTTCCTCCA TCTGCCGTGC
  A
  GTGAAAGCAC TGGTCAGAAC CCGAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147740565	ENSMUSSNP4867033	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321387931	CHEV_4_141091365	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52450030					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141262761 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	715 bp proximal
Cpgi15234	CpG island 15234	1969 bp proximal
Gm4123	predicted gene 4123	99 bp upstream
Rr1207	regulatory region 1207	1311 bp proximal
Rr603787	regulatory region 603787	35 bp distal
Rr603788	regulatory region 603788	1334 bp proximal
Spen	spen family transcription repressor	within coordinates