rs52450166 SNP Detail

Summary

• ID
  rs52450166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54601441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTTAT ACTTCCTCTA
  GTAACTCAAA GACAGGAATA ATATTCTTAA AAAGATACGT TTTTTTTTGG GGGGGGGGTC
  TGGGGGACTT TTGGGATAGC ATTTGAAATG TAAATGAAGA AAATACCTAA TTAAAAAAAT
  AAATTTAAAA AAGTTTAAAA AAAAGATGTT TTTGGCTTGG CTTTTAAAAA CTAGTACTGG
  R
  CTGGAGAGAT GGCTCAGTGA TTAAGAGCAC TGACTACTCT TCCAGACATC CTGAGTTCAA
  ATCCCAGCAA CCACATGGTG GCTCACAACC ACCCATAATG AGATCTGATG CCCTCTTCTG
  GTGTGTCTGA AGACAGCTAC AGTATACTTA TATATAATAA ATAAATAAAT AAATAAAATC
  TTTTAAAAAA ACCTACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135184759	ENSMUSSNP6501071	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320772394	CHEV_3_54497942	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52450166					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54601441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	833 bp distal
Gm65558	predicted gene, 65558	1359 bp upstream
Rr397672	regulatory region 397672	1158 bp downstream
Rr576829	regulatory region 576829	1398 bp distal
Rr576830	regulatory region 576830	905 bp distal
Rr576831	regulatory region 576831	445 bp distal
Rr576832	regulatory region 576832	105 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29131	transcription start site region 29131	1220 bp downstream
Tssr29132	transcription start site region 29132	1184 bp downstream
Tssr29133	transcription start site region 29133	1152 bp downstream
Tssr29134	transcription start site region 29134	1128 bp downstream
Tssr29135	transcription start site region 29135	965 bp downstream
Tssr29136	transcription start site region 29136	941 bp downstream
Tssr29137	transcription start site region 29137	919 bp downstream