rs52450912 SNP Detail

Summary

• ID
  rs52450912
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29582071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GAGGATCCCT CCATAGCTGA
  K
  CTCACTGCAG TATTCCTCCT TTCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61585712	NES17530653	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	T		G	T	G	G		G
ss323979700	CHEV_12_30216937	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52450912					SNP	G	G	G	G	G	G	G	G	T	T	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585712	NES17530653	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29582071 () rs orientation: forward

Symbol	Name	Function Class
Gm20208	predicted gene, 20208	962 bp upstream
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464423	regulatory region 464423	968 bp distal
Rr464424	regulatory region 464424	863 bp distal
Rr464425	regulatory region 464425	828 bp proximal
Tssr113063	transcription start site region 113063	1208 bp upstream
Tssr113064	transcription start site region 113064	1220 bp upstream
Tssr113065	transcription start site region 113065	1279 bp upstream
Tssr113066	transcription start site region 113066	1356 bp upstream
Tssr113067	transcription start site region 113067	1379 bp upstream
Tssr113068	transcription start site region 113068	1405 bp upstream
Tssr116026	transcription start site region 116026	929 bp upstream