rs52451123 SNP Detail

Summary

• ID
  rs52451123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTAAACC AAGGTCCAGG
  ATGAAGTCAA AAGAAGGGGG CTCTGCAACC CGCCTTTAAG ATACCCACTA ACAGCAACCA
  TTTTCTCATC ACAGAGGCAA GGCTAACTGA CCTGGAAAGG AGGAGCCTGG GCTGCTGTCC
  CTCAACGGAA GAACCAAAGA GAAAGAAAAA AACAAACAGC ACCCGGGAAG CCTGGATCGT
  R
  CCTGATGTGC CTCGCTGTCT GAGAGTTCAC TTATTTATTT ATCTATGTAT TTATTTATTT
  ATTAATTCCA TTGCCCAGAT GTTGTTATGT TTATTTTGAT ATTTAAAGAT ATGCATTCGC
  TAATTCACTG TAATATCTTA AAAGGTCATT TTAATATGTT AAAGTTTATT TTAATAATGT
  TTAATGTGTT CAATTAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198253	NES16702739	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52451123					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198253	NES16702739	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053154 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	mRNA-UTR
Rr614422	regulatory region 614422	1412 bp distal
Tssr47224	transcription start site region 47224	1586 bp downstream
Tssr47225	transcription start site region 47225	1484 bp downstream
Tssr47226	transcription start site region 47226	1415 bp downstream
Tssr47227	transcription start site region 47227	1221 bp downstream
Tssr47228	transcription start site region 47228	1158 bp downstream
Tssr47229	transcription start site region 47229	1137 bp downstream
Tssr47230	transcription start site region 47230	1112 bp downstream
Tssr47231	transcription start site region 47231	1082 bp downstream
Tssr47232	transcription start site region 47232	935 bp downstream
Tssr47233	transcription start site region 47233	885 bp downstream
Tssr47234	transcription start site region 47234	850 bp downstream
Tssr47235	transcription start site region 47235	92 bp downstream
Tssr47236	transcription start site region 47236	53 bp downstream
Tssr47237	transcription start site region 47237	33 bp downstream
Tssr47238	transcription start site region 47238	within coordinates
Tssr47239	transcription start site region 47239	28 bp upstream
Tssr47240	transcription start site region 47240	40 bp upstream
Tssr47241	transcription start site region 47241	55 bp upstream
Tssr47242	transcription start site region 47242	92 bp upstream
Tssr47243	transcription start site region 47243	115 bp upstream
Tssr47244	transcription start site region 47244	149 bp upstream
Tssr47245	transcription start site region 47245	169 bp upstream
Tssr47246	transcription start site region 47246	220 bp upstream
Tssr47247	transcription start site region 47247	264 bp upstream
Tssr47248	transcription start site region 47248	327 bp upstream
Tssr47249	transcription start site region 47249	397 bp upstream
Tssr47250	transcription start site region 47250	535 bp upstream
Tssr47251	transcription start site region 47251	599 bp upstream
Tssr47252	transcription start site region 47252	651 bp upstream
Tssr51812	transcription start site region 51812	1068 bp upstream
Tssr51813	transcription start site region 51813	1051 bp upstream
Tssr51814	transcription start site region 51814	77 bp upstream
Tssr51815	transcription start site region 51815	31 bp upstream
Tssr51816	transcription start site region 51816	within coordinates