rs52451306 SNP Detail

Summary

• ID
  rs52451306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGCCTTT AATCCCAGCA
  CTTGGGAGGC AGAGGCAGGT GGATTTCTGA GTTCGAGCCC AGCCTGGTCT ACAGAATTCC
  AGGACATCCA GGGCTACACA GAGAAATCCT GTCTCGAAAA ACTCAAAACA AAACAAATAA
  CAACAAAACC AATAAAAATT GTAAGCCTCA GCGTAACAGA CACAAACAAC TGGACTGAAA
  R
  GAGAAGCGCT AAAGTTGGTT ACCCAGCATT AGCTCTCGAG AAACATCAAC CATTTTCTTA
  CCTATGGTTA CATCTCCTCT GATTTCGCTT TCTACACACA CTACTGCTCC GGGAGCAATC
  TTCACACTGT AGGAAGAAAG AGAACACTCA TCCTGAGTAA CACTGAAAGT ATGGACGGTG
  GGTGAGAGGG CTCCATGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592258	NES16320178	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G		G	A	G	G		G
ss149092848	ENSMUSSNP5471693	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss322575031	CHEV_8_35169334	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52451306					SNP	A	A	A	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592258	NES16320178	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1835 bp proximal
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	623 bp proximal
Rr661953	regulatory region 661953	1055 bp proximal
Rr661954	regulatory region 661954	1562 bp proximal
Rr661955	regulatory region 661955	1571 bp proximal
Tssr80889	transcription start site region 80889	1482 bp downstream
Tssr80890	transcription start site region 80890	1536 bp downstream