rs52451812 SNP Detail

Summary

• ID
  rs52451812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACAAGCA GACATGTGGT
  CTTTTACTAG GCACCAAGGT TGATGATATA CAGCTTTTTA AAAAATGTAT AATAACCAAT
  GTACAGAATA GTAAACATTA TTTTAAATGC TGTCCATTTT TCACAGAAGA ACAAGAAGGG
  CCCTGACCTG TTCTGCCTGG ATCCCATCTG CTGCTAGCCC ATCTTAGCCT TGCTCTCACA
  Y
  ACCTTCCCTC CTCACTCCAT ATCCTAGCCC AGCCCAGCCC AGCCCAGCCC AGCCCAGCCC
  AGCCCAGCCC AGCCCAGCCC AGCCCTAGCT GTGTTCTTCT AGCTGGGCTA TTGATCCCTG
  GAATCTGACC TGGGAAATCA CTTGTTGAAC AGCTTCTTAA AGAAACATGT CTACTAAGAC
  CCGGTGTTGC ATGGAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62679620	NES17313179	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	C	T	C		T
ss325362708	CHEV_17_32795318	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52451812					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679620	NES17313179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877347 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	527 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Tssr143725	transcription start site region 143725	505 bp upstream
Tssr143726	transcription start site region 143726	593 bp upstream
Tssr143727	transcription start site region 143727	616 bp upstream
Tssr143728	transcription start site region 143728	636 bp upstream
Tssr143729	transcription start site region 143729	648 bp upstream
Tssr143730	transcription start site region 143730	671 bp upstream
Tssr143731	transcription start site region 143731	693 bp upstream
Tssr143732	transcription start site region 143732	707 bp upstream