rs52452495 SNP Detail

Summary

• ID
  rs52452495
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37134460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCGTTTG GTGATGTGGG
  TTAAAATGGC TCATCCATCA GGATTTGTGC TTCCAGTAAC TGCAGATAGG TGGAGACTTC
  ACACCAGGGT CTTCACTTCA GCCTTCGAAA GGAATACTTG GTAGGTCTAC CTACATCGAT
  GGAGTAGGTG GGTGTCATAG CAACCGAAGA GGAAAAACTG GGGGGCTCCC CAACACAGCT
  C
  TGTGTGTGTG TGTGTGTGTG TGTATGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG ATTTAGAGCT CTCAAACAAA TACAAGCCTC TTTCAAATCA
  ACTTGCCCTA GAAGGTTTCT ATGCAGACTG TCAGCCATTC AGACCATACT GTGACTTAGT
  AAATAGATGC TTTTCAATGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147623126	ENSMUSSNP6390558	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52452495					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37134460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	1144 bp proximal
Gm34820	predicted gene, 34820	1430 bp upstream
Gm41301	predicted gene, 41301	within coordinates
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	147 bp proximal
Rr302626	regulatory region 302626	within coordinates
Tssr131093	transcription start site region 131093	1685 bp upstream
Tssr134082	transcription start site region 134082	1535 bp downstream