rs52452744 SNP Detail

Summary

• ID
  rs52452744
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88242229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CACACACACA CACACACACA CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135470205	ENSMUSSNP1136828	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52452744					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88242229 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	within coordinates
Cpgi13370	CpG island 13370	1514 bp distal
Cpgi13371	CpG island 13371	906 bp proximal
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	within coordinates
Gm65350	predicted gene, 65350	184 bp downstream
Rr579717	regulatory region 579717	1261 bp distal
Rr579718	regulatory region 579718	665 bp distal
Rr579719	regulatory region 579719	within coordinates
Rr579720	regulatory region 579720	848 bp proximal
Rr579721	regulatory region 579721	1349 bp proximal
Smg5	SMG5 nonsense mediated mRNA decay factor	1338 bp upstream
Tmem79	transmembrane protein 79	468 bp upstream
Tssr29942	transcription start site region 29942	1334 bp upstream
Tssr34001	transcription start site region 34001	456 bp upstream
Tssr34002	transcription start site region 34002	427 bp upstream
Tssr34003	transcription start site region 34003	1243 bp downstream
Tssr34004	transcription start site region 34004	1576 bp downstream