rs52453039 SNP Detail

Summary

• ID
  rs52453039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163483477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGTAAT AACAAGAGGT
  TTTTATTCCG ATTCGTGGGG TCGCTCAGCC TTGCAGGGAG AGTCAACCCT GATTGTCCAA
  AATACAGCTA TTTTATACTC TTTTGAAGGT GTTTACACAG CTATATTATT ATTGGCTAGT
  AAAGCAACCG TATAATTTAT TTGTTTGTTT GTTTTTCTTT TTGGTTTTTT TGAGACAGGG
  Y
  TTCTCTGTAT AGCCCTGGCT GTCCTGGAAC TGACTTTGTA GACCAGGCTG GCCTCTGCCT
  CCCAAGTGCT GGGATTAGAG GCGTGTGCCA CCACCGCCTG GCACAACAGT ATAATTTTAA
  TTTGGCAGAA AACTCTGTCA GCAATCAGCA AGATCAAAGC AGTTTATAGT TTTCCTCAGA
  ATTCAGACTG AGGAGGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148207654	ENSMUSSNP4139858	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52453039					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163483477 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397465	regulatory region 397465			1100 bp upstream
Rr569443	regulatory region 569443			755 bp distal
Rr569444	regulatory region 569444			909 bp distal
Rr569445	regulatory region 569445			12 bp proximal
Serinc3	serine incorporator 3			Intron
				Noncoding-Transcript-Variant
Tssr27320	transcription start site region 27320			1746 bp downstream