rs52455631 SNP Detail

Summary

• ID
  rs52455631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGCTCT TAGCCACTGA
  GCCATTTCTG TAGGTCCTGG TATGTCTCTC TCTCCTCCTT CCTGGGCTCC ATCCATACTA
  GCCTTCTCCT TGCTAAGGAC TAAGCCAAAC TCTATCTTGG GACCTTTTAT TTTTATTTTT
  TATTATTTTT ATATTTTTAT ATATATATTT TTTTTTGCCC AGAAACCATT CAGCTTTGGG
  Y
  ATAAATACTT CTTCCCTTTT TTCTTCTTTT TTTCCTTTTT AAAAATATTT GTTTGTTTAA
  TGTATGTAAG TATACTGTTG CTATCTTCAG ACACACCAGA AGAGGGCATC CAATCCCATT
  ACAGATGGTT GTGAGCCACC ATGTGGTTGC TGGGAATTGA ACTCAGGACC TCTGGACTAT
  TGGTATGTCT GAAGACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972644	NES16155338	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	T	T	T	C	C	C	C	T
ss148469535	ENSMUSSNP180893	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52455631					SNP	C	C	T	T	T	C	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972644	NES16155338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1295 bp distal
Cpgi18450	CpG island 18450	1805 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1932 bp upstream
Gm71808	predicted gene, 71808	1610 bp downstream
Rr155270	regulatory region 155270	1014 bp distal
Rr155271	regulatory region 155271	within coordinates
Rr167137	regulatory region 167137	1213 bp distal
Rr167138	regulatory region 167138	986 bp proximal
Tssr64790	transcription start site region 64790	1927 bp upstream
Tssr64791	transcription start site region 64791	1957 bp upstream
Tssr64792	transcription start site region 64792	1994 bp upstream