rs52455950 SNP Detail

Summary

• ID
  rs52455950
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:4230699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGGC AGCGGGCACG GCAGCTGACC
  G
  GGAGGGCTCC TCGACCATGT GATCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss139175471	ENSMUSSNP7066647	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52455950					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:4230699 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6187	CpG island 6187			within coordinates
Gm62505	predicted gene, 62505			within coordinates
Nr1d2	nuclear receptor subfamily 1, group D, member 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr487195	regulatory region 487195			120 bp distal
Rr487196	regulatory region 487196			222 bp distal
Rr487197	regulatory region 487197			within coordinates
Rr487198	regulatory region 487198			462 bp proximal
Rr487199	regulatory region 487199			868 bp proximal
Tssr127524	transcription start site region 127524			within coordinates
Tssr127525	transcription start site region 127525			56 bp downstream