rs52457028 SNP Detail

Summary

• ID
  rs52457028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATT TTGGCATTCT TTTTCCTTTC
  R
  TCGTATTTCT TTTGAATTTT CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285206	ENSMUSSNP4168893	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52457028					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	991 bp proximal
Gm22980	predicted gene, 22980	204 bp upstream
Gm26330	predicted gene, 26330	820 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr398411	regulatory region 398411	1553 bp upstream
Rr598068	regulatory region 598068	1037 bp distal
Rr598069	regulatory region 598069	1867 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	150 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1405 bp downstream
Tssr38607	transcription start site region 38607	528 bp downstream
Tssr42956	transcription start site region 42956	1478 bp downstream
Tssr42957	transcription start site region 42957	1709 bp downstream
Tssr42958	transcription start site region 42958	1756 bp downstream
Tssr42959	transcription start site region 42959	1778 bp downstream
Tssr42960	transcription start site region 42960	1819 bp downstream
Tssr42961	transcription start site region 42961	1833 bp downstream