rs52457500 SNP Detail

Summary

• ID
  rs52457500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:6413454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCGATT TAAGATTACA
  TTTCCATGAT CAAAAATTAT ATTGAGCATG TTTTATAAGC TTCTTTAGCA TTTGGCTCTG
  TTGTTTAGTG GAGTGAATGT TCAGAATTTG TTGCCAATTG TTAATTGGCT GTTTGTTGCA
  GTTTCCAGTA TTCTAAGTGT ATAATATATT CTAGTTTTCT ATAATCTATT ACAATTTTAT
  R
  TAATATATTT TGTTCATATT TTCCCCTCCC CCAACCTCCT CGAAATATTT TCTACCAGTC
  CTTTGTCAGA TACATGTTGT GAATATTTTC CTAGCTCGTG CTTTGTGCTT TTGCTTTCTG
  TGGTGTCACC TTTGATGAAA TACAAGTTTT TGGGTTCTTT TGTGATTTCT GACTTTCGCA
  TCCTTCTCAA GAAGCCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss134083015	ENSMUSSNP1132029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs52457500					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:6413454 () rs orientation: forward

Symbol	Name	Function Class
5430428K19Rik	RIKEN cDNA 5430428K19 gene	within coordinates
DXMit203	DNA Segment, Chr X Massachusetts Institute of Technology 203	1511 bp proximal
Shroom4	shroom family member 4	within coordinates