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rs52457647 SNP Detail
Summary
  • ID
    rs52457647
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:46332670 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AAAACAAGCT CCAATATACT TTATTGGTTT TCTTTATACT
    GTATGTTTTG ATCCTATTTT TCCCTTTCCT CAGCTCTTCC CAGATCCTCT CCCTCTCCCC
    Y
    TTCCCCCTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGC
    ACGTGCGAAA AATAAAGTCA AAATATTCCA CAAAAAAAA                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss146263393 ENSMUSSNP84092 ENSEMBL ENSEMBL_Sanger f SNP T T
ss321104452 CHEV_4_46345542 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs52457647 SNP T T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:46332670 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D4Mit89 DNA segment, Chr 4, Massachusetts Institute of Technology 89 within coordinates
Gm12446 predicted gene 12446 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory