rs52458324 SNP Detail

Summary

• ID
  rs52458324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:115664070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTATACT CAAGGAGAAC
  TAATTAGCAT AATAAATACA AATCAAGGAA ATGTCTCTAT GAAACAGAAA GGTGAACGGA
  AACAAATGCT GAGAACAAAA GCAAGGAAGT AATTATAATA GCTAGGACAA TGCAGATAAA
  AGATGGAACA TATTTAAGAT ATTTTCGTAC AGGATATTTT AAAAGCTATA AGGGAACATA
  Y
  TTATTGTCTA ATAACAATAT CTAATGTCTA ACCTAAAATA CATAAATATG TATATCATAT
  ATACACATAT TTATGCATAT ATGCATGTGC TATATATACA TGCACATATA TATACATATG
  TATATATTTA TATATGCACA CACATATATA TGGAGAGAGA GAAAGAGAGT GGGAGAGAGA
  GAGACAAAGT TTGAAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss62053072	NES17142593	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	T	C	T	T		T	C	T	T
ss145345298	ENSMUSSNP4256783	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss324536106	CHEV_13_116317742	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs52458324					SNP	C	C	T	C	C	C	C	T	C	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62053072	NES17142593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:115664070 () rs orientation: forward

Symbol	Name	Function Class
Gm6035	predicted gene 6035	1022 bp downstream