rs52458920 SNP Detail

Summary

• ID
  rs52458920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46739777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCTTCT CACTGACCAG
  AGAGGCCATT GAACTCAGGG CTCCCTCCCT CCCAAGTCTG TATCCCACTT TGAAGTTCTT
  TAAAGTAAGT TGATAAGTCT CAGGGTCCCT CAGTTCTAAG TTTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCCCA ATGAGCAGCC ACAACTCAAA
  M
  GGGCTCAAAG CTGAATAGTG GGCAGGGCTG GTGGAGGGGC GGGGCATATC AGCGGGCTCC
  TATAGTTGCT GCTTGGACTA AGCTATCTCA TGAAGAACCA TGAGCTGGAC TTGTCCGCGT
  TGTCAGCAAC CCGTTTACTT TGGTAAGGCT GGGACCTAGG AGGAGTAAAG GCAACCTTGA
  GCCCCCGGGT CCCCTGTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62759519	NES17344203	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52458920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759519	NES17344203	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46739777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crip3	cysteine-rich protein 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr527733	regulatory region 527733			within coordinates
Rr527734	regulatory region 527734			111 bp proximal
Tssr144853	transcription start site region 144853			66 bp upstream
Tssr144854	transcription start site region 144854			79 bp upstream