rs52458985 SNP Detail

Summary

• ID
  rs52458985
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98946890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTCAGG TTTCAAAGGT
  ACTTTATTTC TTTATTTTTT TCTTCAGTCT GCTGTACTTT AATGAGTCCA CGATTCTTTG
  ACTTGGCATT CACTTATGAG GTTTTTTTTG TTTTGTTTTG TTTTGTTTTC TGTTTTTTGT
  TTTTGGGTTT TGTTTTGTTT TGTTGTTTTT TGTTTTTCCA AGACAGGGTT TCTCTGTGTA
  T
  CCCTGGCTGT TCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCAAACTCA GAAATCCACC
  TGCCTCTGCC TCCTGAGTGC TGGGATTGAA GGCATGAGCC ACCACGCCCG GCAAGACCTA
  GTATTTTTAT TGATGAGTAT CTTGCTCTAT ATCTGGGCAG ATACTGAGCT ATTCTAACCC
  AACTATGCTG GCCTGGCCTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148463837	ENSMUSSNP897528	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52458985					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98946890 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	890 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	311 bp proximal
Rr311358	regulatory region 311358	1657 bp distal
Rr315589	regulatory region 315589	311 bp proximal