rs52459406 SNP Detail

Summary

• ID
  rs52459406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83476507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAACT CTTGTCCAAG
  GGAAAATAAA AGAAAGAAAA ATAATTGTCA CCTTTACATC TGAAGAAAAA AATCAGGATT
  TGGGAGACTT AAATCTCTGG GAATAATAAT CTGGTGGCAA TTCAATATTG TGCCAACAAA
  GGACATTCAG AAATAGCATT TTACTTACAA ACTACTGAGA TTGAATAAAT ATAAAATAGA
  Y
  CACAAAACAG TAAAATTTCC ATTCAAAAAT AAATGTTACA AAACATTATA GAATGTATTT
  CAGGCCACTT GGACCTATAA CCACTTTTAA TTAATGAGAC TAAAGGGTTT TTTGTTTCGT
  TAATTTTTGT CACCTGACAG TGGAGATGAC ACTCAGAAGG GCAGAGGCAG GTAGAGCTCT
  GAATTCAAGA GTAGCCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146812159	ENSMUSSNP5972502	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52459406					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83476507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11854	CpG island 11854	894 bp distal
Rr57102	regulatory region 57102	106 bp distal
Rr397083	regulatory region 397083	1587 bp downstream
Tssr18640	transcription start site region 18640	1673 bp downstream
Tssr18641	transcription start site region 18641	1642 bp downstream
Tssr18642	transcription start site region 18642	1616 bp downstream
Tssr18643	transcription start site region 18643	1586 bp downstream
Tssr18644	transcription start site region 18644	1571 bp downstream
Zc3h15	zinc finger CCCH-type containing 15	within coordinates