rs52459587 SNP Detail

Summary

• ID
  rs52459587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40481575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGACTGG GTATAAAACA
  TCATAGACAA ATAAATAGTT TGAAATTAAC AAAATGAAGT TCATAAAGAG AAAAATAACT
  TAAAAAGAAC AGCCACATAA AGATGGAAAA GAGTTTAAGA AAACTTATGT ACAGGAAACA
  ATATTAAGCT TAGAAAGCAT TAAGAGAGAA ATAAATAAAT ACACCTGGAA GATAAGTCTC
  Y
  AAAACAAAGA GAGAGAAAAA TAAACTGAAA TCTCCAGAGG AAGGAGAAAC TTAGAGAGAT
  TAAAAAAGGA AATATTTTCC ATGCAAAAAT ATGGAAAACA CGATAGAAGA AGGCATTTGG
  ACCCCATATA GTTTTGTTTT GACTGTCAAC ATAAAAATAC TTATATGTTC AGTAGTGGTA
  CAATTTTATA TATCCCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273415	NES16894496	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52459587					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273415	NES16894496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40481575 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	175 bp distal
Rr222650	regulatory region 222650	205 bp distal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	1447 bp downstream