rs52459963 SNP Detail

Summary

• ID
  rs52459963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90400264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG CATATGGGTA GAGGTCAGAG
  R
  ACAATTTGTG AGAGGTCAAT TCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837900	CHEV_3_90296879	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52459963					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90400264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1775 bp distal
Rr397812	regulatory region 397812	1658 bp downstream
Rr580375	regulatory region 580375	1434 bp distal
Rr580376	regulatory region 580376	1898 bp distal
Rr580377	regulatory region 580377	1786 bp distal
Rr580378	regulatory region 580378	1462 bp distal
Rr580379	regulatory region 580379	955 bp proximal
Snapin	SNAP-associated protein	1944 bp upstream
Tssr34234	transcription start site region 34234	1919 bp upstream