rs52461267 SNP Detail

Summary

• ID
  rs52461267
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGCCAC CCTGTAAATG
  ATTGATAATG TAAAGAATGT TAAAAGGGGG CAGTGGTGGA GCACGCCTTA AATCCCAGCA
  GTCGGGAGGC AGAGGCAGTC AGATTTCTGA GTTCTCTGAG TTCAAGGCCA GCCTGGTCTA
  CAAAGTGAGT TCCAGGACAA CCAGGGCTAC ACAGAGAAAT CCTGTCTCGA AAAACAAAAA
  C
  AAAACAAAAC AAAACAAAAC AAAAAAAAGG GGGGGGGGAG GTGCTAAAGA GTTCAGCAGT
  TAAAAACACT TGATGCTCTG CTGCAGAGGA CCCAAGTCCA GGTCCCAAGG CCCAAGCGGT
  ATGGCTTACA AATACCTGTG CATATAGCTC CAGGGGATGT GACGCCCTCT CTTGGGTTCT
  TCACACACTG GAGTGCGCAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136760254	ENSMUSSNP4820360	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52461267					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579668 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1246 bp distal
Gm55057	predicted gene, 55057	1428 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1701 bp upstream
Rr205233	regulatory region 205233	475 bp distal
Rr206830	regulatory region 206830	1067 bp distal
Rr211051	regulatory region 211051	934 bp proximal
Tssr90786	transcription start site region 90786	1959 bp upstream
Tssr90787	transcription start site region 90787	1937 bp upstream
Tssr90788	transcription start site region 90788	1826 bp upstream
Tssr90789	transcription start site region 90789	1761 bp upstream
Tssr90790	transcription start site region 90790	1657 bp upstream