rs52462013 SNP Detail

Summary

• ID
  rs52462013
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121279020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTGATTTCT CTTACAAACC AAATGTAAGG TTTAGGGGAA
  ATGATACAAT GTAGGCACGG TCGAGAGAGA GGAGAGAGGA GGAGAGAGGA GACAGAGAGA
  C
  AGAGACAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAAAGAG
  AGAGATGCAA ACTAATAAAA TAGGAGCATT CCCTAATCTC G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147386351	ENSMUSSNP4787802	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52462013					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121279020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12159	CpG island 12159	266 bp proximal
Gm75262	predicted gene, 75262	within coordinates
Rr55495	regulatory region 55495	within coordinates
Rr397250	regulatory region 397250	576 bp upstream
Serf2	small EDRK-rich factor 2	659 bp upstream
Tssr19771	transcription start site region 19771	823 bp upstream
Tssr19772	transcription start site region 19772	1767 bp upstream
Tssr25936	transcription start site region 25936	1656 bp downstream