rs52462834 SNP Detail

Summary

• ID
  rs52462834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118171912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACTACA GAATAGAACA
  TTGATTGCCA CCTGCTTCTC CACCCACGCC AGATGGTAGC AGCTGGCTCT AGGTTCTCAC
  AGGCTGCATG AAATGAGTCA GCTACCTGGA GTCTTCCTAC CTACGAAGAA TCCTGGGAAA
  TGACCATTTT TACTGTGACC CACAAAACGC AGTGAGACAG AATTTTAAGT TTTACTTGAC
  Y
  ATGTCTAACA CATAGACACA TGCACACACA CTGAGTGTGT CTAACACGTA GACACATGTA
  CACACACTGA GTGTGTCCAC ACGTAGACAC ATGTACACAC ACTGAGTGTG TCTAACACAT
  AGACACATGC ACACACACTG AGTGTGTCTA ACACGTAGAC ACATGCACAC ACACTGAGTG
  TGTCCACACG TAGACACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61231101	NES16848806	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52462834					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61231101	NES16848806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118171912 () rs orientation: forward

Symbol	Name	Function Class
Gm33088	predicted gene, 33088	1188 bp upstream