rs52462871 SNP Detail

Summary

• ID
  rs52462871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154197193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTAAGGGGGG TGCATTTGTT TGTTTGTATT TACAACCTTA
  AAATTTTATA AAAAGTTTAA AATGTAATTG CATTAAATTA AAATAGTTAA TTTTATTAAA
  W
  TATTATGCCA TTTTTCCCCA TCCTTTTCTT CTCTCAATCC TCTACCACGA ACACCCCCTC
  CTATGTTCTT TCTTAAGTCC ATGGTCTCTA AACTCTTTTT C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145760201	ENSMUSSNP4299685	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52462871					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154197193 () rs orientation: forward

Symbol	Name	Function Class
Gm18727	predicted gene, 18727	1609 bp downstream