rs52464505 SNP Detail

Summary

• ID
  rs52464505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52141740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGAGCC CCCTCGTCCA
  TCCTTGATTT CCCTAGAATT CTCCAATTTT TTCAACTTTT TTTTTATAAT TCAAAATACC
  ATGCCAAAGG CATAAGGACA TAAACAAATA TGAACTAATT TTCATTTGGG GAACTACCTC
  CTCCCCCTTC TGCTCCTCCT CCCCTTCTTC TTCCTCCTCG CCCCCCCACC CCCAAGCCAA
  M
  GAGCCCCCTG GAAAGCAAAG CAAGAAGCTA TGGGTGATTA CAAAGAGCAA AACAACATAA
  AACATGAGTT TCTCTTCCTG GCTCAGGTTT TTCCCTTCAA GTCCTGGGTG ACTTCAAATT
  TTCTTGCCTT GATTTGCCAA AGTAGGGACT TGTCTAACTA GGTGCCAGTG TCCCCACTGA
  GCAGGGCAGG TGAGAATGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145757484	ENSMUSSNP3707138	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52464505					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52141740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	1081 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	1320 bp downstream
Rr528752	regulatory region 528752	1550 bp distal
Rr528753	regulatory region 528753	1730 bp distal
Rr528754	regulatory region 528754	932 bp distal
Satb1	special AT-rich sequence binding protein 1	1422 bp upstream
Tssr145166	transcription start site region 145166	1935 bp downstream
Tssr145167	transcription start site region 145167	1912 bp downstream
Tssr145168	transcription start site region 145168	1887 bp downstream
Tssr145169	transcription start site region 145169	1695 bp downstream
Tssr145170	transcription start site region 145170	1675 bp downstream
Tssr145171	transcription start site region 145171	1451 bp downstream
Tssr145172	transcription start site region 145172	241 bp downstream
Tssr148684	transcription start site region 148684	1609 bp upstream
Tssr148685	transcription start site region 148685	1574 bp upstream
Tssr148686	transcription start site region 148686	1466 bp upstream
Tssr148687	transcription start site region 148687	1442 bp upstream
Tssr148688	transcription start site region 148688	1413 bp upstream