rs52465028 SNP Detail

Summary

• ID
  rs52465028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57389151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACTCTT ACTGCAGTAC
  TTAGGCGGTA GCAGCTGTAG GACCAGGCAT TTAAGACTAG CTACAGTTAC ATGATGAGTT
  GGAGGCCAGC CTGTGCTACA TGAGATTCAG TAGTTAATAG ATAACAATGA AAAGACTGGA
  AGAATAATGC TAGCACTATT GTTATTTTAC TGATTTAATT TACTTTTGGG GACTGTGGTG
  R
  TTAGTTTTAT TTTATTTTAT TCATTCATTC ATTCATTCAC TCATTTATTT ATTTTAATAG
  CTTTGTTCTA GCTGGATGTG GTAGTGTGTA CCTTTAAACT CAGCACTGGG GAGGGGGAGC
  ACAAGGCCAG CCTGTTTACA CAGTGAGACT TAAAAACCAA CCAACCAACC AACCAACCAA
  CCAACCAACC AACCAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807921	NES17358150	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52465028					SNP	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807921	NES17358150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57389151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	311 bp distal
Gm56907	predicted gene, 56907	within coordinates
Rr529268	regulatory region 529268	1868 bp distal
Tssr5182	transcription start site region 5182	1907 bp downstream
Tssr145372	transcription start site region 145372	1866 bp downstream
Tssr145373	transcription start site region 145373	1546 bp downstream
Tssr145374	transcription start site region 145374	1430 bp downstream
Tssr148882	transcription start site region 148882	1736 bp upstream
Tssr148883	transcription start site region 148883	1643 bp upstream
Tssr148884	transcription start site region 148884	1574 bp upstream
Tssr148885	transcription start site region 148885	1526 bp upstream
Tssr148886	transcription start site region 148886	1505 bp upstream
Tssr148887	transcription start site region 148887	1489 bp upstream
Tssr148888	transcription start site region 148888	1446 bp upstream
Tssr148889	transcription start site region 148889	1422 bp upstream
Tssr148890	transcription start site region 148890	1321 bp upstream
Tssr148891	transcription start site region 148891	1201 bp upstream
Tssr148892	transcription start site region 148892	1182 bp upstream
Tssr148893	transcription start site region 148893	969 bp upstream
Tssr148894	transcription start site region 148894	897 bp upstream
Tssr148895	transcription start site region 148895	493 bp upstream
Tssr148896	transcription start site region 148896	426 bp upstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates