rs52465346 SNP Detail

Summary

• ID
  rs52465346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18300067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG AAAGAAGTAA AGGAGAAAGG
  R
  AGGATATCTG CATGGATTCA TCTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148452115	ENSMUSSNP1978404	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss322115406	CHEV_7_19151491	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52465346					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18300067 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	within coordinates
Tssr2095	transcription start site region 2095	1407 bp downstream
Tssr64739	transcription start site region 64739	1052 bp downstream
Tssr64740	transcription start site region 64740	1031 bp downstream
Tssr70834	transcription start site region 70834	1049 bp downstream
Tssr70835	transcription start site region 70835	1145 bp downstream
Tssr70836	transcription start site region 70836	1176 bp downstream
Tssr70837	transcription start site region 70837	1232 bp downstream
Tssr70838	transcription start site region 70838	1376 bp downstream