rs52465976 SNP Detail

Summary

• ID
  rs52465976
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTTTTCTTT CTTTCTTCCT CTCTCTCTCT TCCTCTCTCT
  TCCTCTTTCT CTCTCTTCCT CTCTCTCTCT TCCTCTCTCT CTTCCTCTCT CTTCCTCTCT
  T
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG TGAGATGATG
  GTCTTCCTTT GTAGCTCAGG CATCAGAGGC TCTTGGCTCA G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss132349980	ENSMUSSNP6389301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52465976					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047072 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	826 bp upstream
Cpgi3111	CpG island 3111	693 bp proximal
Rr449891	regulatory region 449891	496 bp proximal
Rr449892	regulatory region 449892	754 bp proximal
Rr449893	regulatory region 449893	1863 bp proximal
Tssr102419	transcription start site region 102419	642 bp upstream
Tssr102420	transcription start site region 102420	667 bp upstream
Tssr102421	transcription start site region 102421	786 bp upstream
Tssr102422	transcription start site region 102422	807 bp upstream
Tssr102423	transcription start site region 102423	817 bp upstream
Tssr102424	transcription start site region 102424	838 bp upstream