About   Help   FAQ
rs52465988 SNP Detail
Summary
  • ID
    rs52465988
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44130559 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGTTT CTCCTAATTA TTTCTACTCC
R
TCTCCTCTAT CCCTCCTCTC CTTTA                                      

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
A/J
AKR/J
BALB/cByJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss61002163 NES16118684 PERLEGEN MM_PANEL2 f SNP G G G A G A A A G
ss322198948 CHEV_7_51736505 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
DBA/2J
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs52465988 SNP G G G A G A A A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss61002163 NES16118684 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130559 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1449 bp proximal
Tssr2228 transcription start site region 2228 1052 bp downstream
Tssr2229 transcription start site region 2229 777 bp downstream
Tssr2230 transcription start site region 2230 594 bp downstream
Tssr2231 transcription start site region 2231 467 bp downstream
Tssr2232 transcription start site region 2232 293 bp downstream
Tssr2233 transcription start site region 2233 248 bp downstream
Tssr2234 transcription start site region 2234 100 bp downstream
Tssr2235 transcription start site region 2235 532 bp upstream
Tssr66295 transcription start site region 66295 1900 bp downstream
Tssr66296 transcription start site region 66296 1729 bp downstream
Tssr66297 transcription start site region 66297 1705 bp downstream
Tssr66298 transcription start site region 66298 1650 bp downstream
Tssr66299 transcription start site region 66299 1630 bp downstream
Tssr66300 transcription start site region 66300 1607 bp downstream
Tssr66301 transcription start site region 66301 1591 bp downstream
Tssr66302 transcription start site region 66302 1550 bp downstream
Tssr66303 transcription start site region 66303 1541 bp downstream
Tssr66304 transcription start site region 66304 1536 bp downstream
Tssr66305 transcription start site region 66305 1497 bp downstream
Tssr66306 transcription start site region 66306 1443 bp downstream
Tssr66307 transcription start site region 66307 1394 bp downstream
Tssr66308 transcription start site region 66308 1377 bp downstream
Tssr66309 transcription start site region 66309 1327 bp downstream
Tssr66310 transcription start site region 66310 1258 bp downstream
Tssr66311 transcription start site region 66311 1235 bp downstream
Tssr66312 transcription start site region 66312 1216 bp downstream
Tssr66313 transcription start site region 66313 1206 bp downstream
Tssr66314 transcription start site region 66314 1188 bp downstream
Tssr66315 transcription start site region 66315 1181 bp downstream
Tssr66316 transcription start site region 66316 1116 bp downstream
Tssr66317 transcription start site region 66317 1100 bp downstream
Tssr66318 transcription start site region 66318 1059 bp downstream
Tssr66319 transcription start site region 66319 1031 bp downstream
Tssr66320 transcription start site region 66320 1007 bp downstream
Tssr66321 transcription start site region 66321 983 bp downstream
Tssr66322 transcription start site region 66322 967 bp downstream
Tssr66323 transcription start site region 66323 929 bp downstream
Tssr66324 transcription start site region 66324 876 bp downstream
Tssr66325 transcription start site region 66325 835 bp downstream
Tssr66326 transcription start site region 66326 825 bp downstream
Tssr66327 transcription start site region 66327 805 bp downstream
Tssr66328 transcription start site region 66328 787 bp downstream
Tssr66329 transcription start site region 66329 748 bp downstream
Tssr66330 transcription start site region 66330 735 bp downstream
Tssr66331 transcription start site region 66331 721 bp downstream
Tssr66332 transcription start site region 66332 688 bp downstream
Tssr66333 transcription start site region 66333 653 bp downstream
Tssr66334 transcription start site region 66334 647 bp downstream
Tssr66335 transcription start site region 66335 636 bp downstream
Tssr66336 transcription start site region 66336 622 bp downstream
Tssr66337 transcription start site region 66337 606 bp downstream
Tssr66338 transcription start site region 66338 522 bp downstream
Tssr66339 transcription start site region 66339 490 bp downstream
Tssr66340 transcription start site region 66340 423 bp downstream
Tssr66341 transcription start site region 66341 374 bp downstream
Tssr66342 transcription start site region 66342 345 bp downstream
Tssr66343 transcription start site region 66343 319 bp downstream
Tssr66344 transcription start site region 66344 162 bp downstream
Tssr66345 transcription start site region 66345 125 bp downstream
Tssr66346 transcription start site region 66346 53 bp downstream
Tssr66347 transcription start site region 66347 35 bp downstream
Tssr66348 transcription start site region 66348 within coordinates
Tssr66349 transcription start site region 66349 13 bp upstream
Tssr66350 transcription start site region 66350 41 bp upstream
Tssr66351 transcription start site region 66351 49 bp upstream
Tssr66352 transcription start site region 66352 85 bp upstream
Tssr66353 transcription start site region 66353 159 bp upstream
Tssr66354 transcription start site region 66354 173 bp upstream
Tssr66355 transcription start site region 66355 200 bp upstream
Tssr66356 transcription start site region 66356 217 bp upstream
Tssr66357 transcription start site region 66357 231 bp upstream
Tssr66358 transcription start site region 66358 243 bp upstream
Tssr66359 transcription start site region 66359 269 bp upstream
Tssr66360 transcription start site region 66360 281 bp upstream
Tssr66361 transcription start site region 66361 307 bp upstream
Tssr66362 transcription start site region 66362 339 bp upstream
Tssr66363 transcription start site region 66363 356 bp upstream
Tssr66364 transcription start site region 66364 389 bp upstream
Tssr66365 transcription start site region 66365 409 bp upstream
Tssr66366 transcription start site region 66366 429 bp upstream
Tssr66367 transcription start site region 66367 457 bp upstream
Tssr66368 transcription start site region 66368 479 bp upstream
Tssr66369 transcription start site region 66369 513 bp upstream
Tssr66370 transcription start site region 66370 555 bp upstream
Tssr66371 transcription start site region 66371 980 bp upstream
Tssr66372 transcription start site region 66372 1143 bp upstream
Tssr66373 transcription start site region 66373 1433 bp upstream
Tssr66374 transcription start site region 66374 1491 bp upstream
Tssr66375 transcription start site region 66375 1502 bp upstream
Tssr66376 transcription start site region 66376 1515 bp upstream
Tssr66377 transcription start site region 66377 1554 bp upstream
Tssr66378 transcription start site region 66378 1576 bp upstream
Tssr66379 transcription start site region 66379 1588 bp upstream
Tssr66380 transcription start site region 66380 1621 bp upstream
Tssr66381 transcription start site region 66381 1640 bp upstream
Tssr66382 transcription start site region 66382 1664 bp upstream
Tssr66383 transcription start site region 66383 1774 bp upstream
Tssr66384 transcription start site region 66384 1872 bp upstream
Tssr72202 transcription start site region 72202 1327 bp upstream
Tssr72203 transcription start site region 72203 947 bp upstream
Tssr72204 transcription start site region 72204 347 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory