rs52466362 SNP Detail

Summary

• ID
  rs52466362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102980951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTC TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGAGTATAT GTAGTGTGTA
  TGAGTGTGTG TGTGTGTGTA AAAGAGTTGT GTGTGGCTGT GCATGGGAGT GTGTGAGTGT
  GGTGTGTGTG ATAGAGCATT TGGGTGTATA AGTGTGAGTG TTAAGTGTGT GAGAGTATGT
  W
  TGGGTAAGAG TGTGAGCAAA AGACTTATGA ACGTACGATG ACATTCACCA ACTGCAGAAA
  GCCCTCCTGG TGTTAGGATG CTCCTTTTCA GAAGCCCCTG ACACTGTGCT GTAAGTGGAG
  TGGAAAATAA ACACAGGATC ACATCGAGTA AGAAAAGGCA CACTTGATGA GCCAGCATGT
  TTGTGGGGAA TGTTGAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60430148	NES15929893	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52466362					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430148	NES15929893	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102980951 () rs orientation: forward

Symbol	Name	Function Class
Ampd1	adenosine monophosphate deaminase 1	379 bp upstream
Gm43062	predicted gene 43062	1143 bp downstream
Tssr30962	transcription start site region 30962	374 bp upstream
Tssr30963	transcription start site region 30963	400 bp upstream