rs52467048 SNP Detail

Summary

• ID
  rs52467048
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24926817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGTGGAT GCTGGCAGCT GGCAGTAGAA CGTCTTATTT
  ACTGTTTTCA TTTGGGTCTG TTTTCCTTTC CTTTCCTTTT TCCTTTCCTT TCCTTAACTG
  C
  CCTGTCCTTT TTTTTTTTTT CTTTTGGTTT TGTTAGACAA GATGTCTTTT ACAACAACGG
  ATTGGTGTCT CGGCGGTGCT TAAAGCTTCC CCTATCGCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145361750	ENSMUSSNP6915458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52467048					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24926817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	within coordinates
Rr405091	regulatory region 405091	within coordinates
Rr523395	regulatory region 523395	194 bp distal
Rr523396	regulatory region 523396	within coordinates
Rr523397	regulatory region 523397	817 bp proximal
Rr523398	regulatory region 523398	1019 bp proximal
Tbl3	transducin (beta)-like 3	190 bp upstream
Tssr146772	transcription start site region 146772	233 bp upstream
Tssr146773	transcription start site region 146773	182 bp upstream