rs52468242 SNP Detail

Summary

• ID
  rs52468242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165506280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GATATTTAAA TAAGATGAGC AGAAGTGGTG TGGACAATGT
  GCATGGTGTG TGTGTGTGTG TGCATGGTGT GTGTGTGTGT GTGTGTGTGC ATGGCTGTGT
  R
  TGTATGTGTG TGTGTGCATC GTGTGTGTAT GTGTGTGTGT GTATGTGTGT GTGTGCATGG
  TGTGTGTGTG TGTGTGCATG GCTGTGTGTG TATGTGTGTA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146004951	ENSMUSSNP4268963	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52468242					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165506280 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	521 bp proximal
Tssr14776	transcription start site region 14776	111 bp downstream
Tssr14777	transcription start site region 14777	207 bp downstream