rs52468426 SNP Detail

Summary

• ID
  rs52468426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29893311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCAGCCC AGACTAATTA AGAATTCTCA GGTCGGACTC
  TAAGTGAGTC TTTATTATTT GGCCCGCCCC GCCCCTTCAG GCCCCGCCTT ACCTGATGGC
  R
  CTAATGACTC CGCCCAGGAT GCGCATGGCA GTTCCACCGC CTCCGCCACC TCCTCCCAGT
  CCCATGCCTC CACCGCCACC GCCGCCGCCG CCAGCAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991875	NES16142402	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	A	G	G		G	G	G	A		A
ss322132188	CHEV_7_30978905	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52468426					SNP	G	A	A	G	A	A	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991875	NES16142402	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29893311 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	857 bp distal
Cpgi18782	CpG island 18782	within coordinates
Cpgi18783	CpG island 18783	593 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	within coordinates
Rr400233	regulatory region 400233	1149 bp upstream
Tssr65662	transcription start site region 65662	43 bp upstream
Tssr71696	transcription start site region 71696	956 bp upstream
Tssr71697	transcription start site region 71697	935 bp upstream
Tssr71698	transcription start site region 71698	904 bp upstream
Tssr71699	transcription start site region 71699	778 bp upstream
Tssr71700	transcription start site region 71700	743 bp upstream
Tssr71701	transcription start site region 71701	519 bp upstream
Tssr71702	transcription start site region 71702	67 bp upstream
Tssr71703	transcription start site region 71703	114 bp downstream
Tssr71704	transcription start site region 71704	208 bp downstream
Tssr71705	transcription start site region 71705	266 bp downstream
Tssr71706	transcription start site region 71706	1134 bp downstream
Tssr71707	transcription start site region 71707	1146 bp downstream
Tssr71708	transcription start site region 71708	1160 bp downstream
Tssr71709	transcription start site region 71709	1335 bp downstream
Tssr71710	transcription start site region 71710	1677 bp downstream