rs52468539 SNP Detail

Summary

• ID
  rs52468539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155926013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT TACAGAGGAT CGTGAGTGTG
  Y
  CCCTTCCTCT CCTTCGCTAT TTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148117674	ENSMUSSNP934707	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321443285	CHEV_4_155215665	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52468539					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155926013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1378 bp upstream
Rr398927	regulatory region 398927	72 bp downstream
Tssr40724	transcription start site region 40724	1872 bp downstream
Tssr40725	transcription start site region 40725	1852 bp downstream
Tssr40726	transcription start site region 40726	1794 bp downstream
Tssr40727	transcription start site region 40727	1732 bp downstream
Tssr40728	transcription start site region 40728	1716 bp downstream
Tssr40729	transcription start site region 40729	448 bp downstream
Tssr40730	transcription start site region 40730	418 bp downstream
Tssr40731	transcription start site region 40731	389 bp downstream
Tssr40732	transcription start site region 40732	381 bp downstream
Tssr40733	transcription start site region 40733	80 bp downstream
Tssr40734	transcription start site region 40734	1495 bp upstream
Tssr44980	transcription start site region 44980	501 bp upstream
Tssr44981	transcription start site region 44981	452 bp upstream