rs52469232 SNP Detail

Summary

• ID
  rs52469232
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75065507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAGAGACAGG CAGATTTCTG AGTTCGAGGC CAGCCTGGTC
  TACAAAGTGA GTTCCAGGAC AGCCAGGGCT ATACAGAGAA GCCCTGTCGT CTCGAAAAAA
  C
  CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAGAA AAAAGAAAAA AAGAAAAGAG
  GACCTTTTGC AGATGGAACC CATCAGAAGA TGTGGTTAGA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132437124	ENSMUSSNP2935044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52469232					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75065507 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	within coordinates
Cpgi3254	CpG island 3254	630 bp distal
Mir132	microRNA 132	934 bp downstream
Mir212	microRNA 212	1203 bp downstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	934 bp distal
Ovca2	candidate tumor suppressor in ovarian cancer 2	1262 bp downstream
Rr402719	regulatory region 402719	1383 bp downstream
Rr451079	regulatory region 451079	968 bp distal
Rr451080	regulatory region 451080	374 bp distal