rs52469916 SNP Detail

Summary

• ID
  rs52469916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16191097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCATGGG AGATGACCTG
  GGGACACTTT CCTATCTAGC CATCTCAGTG AATGGAAACA GTGCATTTAA TTTGCTTGCC
  TTTCTCCCTC CAAAGAAAAA AGGTGAGGCA AGGAAAAGGA TTGAGCAGAG AAAGATGAAA
  AGAAAGAGAG AGAGAGAGAG AGAAAGAAAG AAACCCCTAG ACTAAAAGTG AACCGATTTA
  R
  AAGAATTTAT TGTAGAAAGG ACTGGAGTGC CCCCCCCCCC CCATTCTTCA GAGAATGGCA
  GGATTGGAAG AGAGGTGTGT GTGAGGGAGC AAGGAGCAGC AAGAAGGCAG CCTGTCAGAA
  ACGGGCTGTC CCTCCTCCCT AGTCACAGCT CATACTCACA GACGCCCTCC CTCCTCCCTC
  TCCCATTCAC TCACTCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620145	NES15517509	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52469916					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620145	NES15517509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16191097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	812 bp proximal
Inhba	inhibin beta-A	within coordinates
Tssr118435	transcription start site region 118435	172 bp downstream
Tssr118436	transcription start site region 118436	172 bp upstream
Tssr118437	transcription start site region 118437	412 bp upstream
Tssr118438	transcription start site region 118438	535 bp upstream
Tssr118439	transcription start site region 118439	552 bp upstream
Tssr118440	transcription start site region 118440	771 bp upstream
Tssr118441	transcription start site region 118441	861 bp upstream
Tssr118442	transcription start site region 118442	1107 bp upstream
Tssr118443	transcription start site region 118443	1588 bp upstream
Tssr118444	transcription start site region 118444	1655 bp upstream