rs52470425 SNP Detail

Summary

• ID
  rs52470425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:120271693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAACCA CAGGACTGGG
  GATGTATCTC AGCTGGTGGT ATGCCTGCCT CGCACTCTTA GGCTCCAAGT TTGGTTGCAA
  GCACCACTTA AACTGGGTGT GATGGTGAGG GCTGATGGTG AGGGCCTAAA GTCCCCTTAC
  TTGAAAGGGA GAAGCAAAGG ATCAGAAGTT CAAGGTCATC CTGGACTGCA TAACAAACTC
  M
  AAGCCTAGGG TACAGTCAAA ACAAAAAACA AAACAAAACA AAACAACCAC AAAAAGAAGG
  AAGGAAGGAA AAAGAAACAA AGCAAACTGC TACAGTTAGC CATATGCTAA CCTGGTTTAA
  TAAACAGCAA AAAAAAAAAA AAAAAAGTTC CCTTGGCGGC ATTAGGCCCT CTATACTACA
  GAAAACACTG CATTAAGTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60669540	NES16248923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52470425					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60669540	NES16248923	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120271693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbtps1	membrane-bound transcription factor peptidase, site 1			Intron
				Noncoding-Transcript-Variant
Rr382729	regulatory region 382729			1593 bp upstream
Tssr83126	transcription start site region 83126			126 bp downstream