rs52470680 SNP Detail

Summary

• ID
  rs52470680
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58886533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACG AGTCACGAGG CGACGAGTCA
  T
  GAGGTGACGA GTCATGAGGT GGTGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136525665	ENSMUSSNP2097241	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322974164	CHEV_9_58827057	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52470680					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58886533 () rs orientation: forward

Symbol	Name	Function Class
Gm47271	predicted gene, 47271	within coordinates
Neo1	neogenin	within coordinates
Rr383441	regulatory region 383441	within coordinates
Rr680057	regulatory region 680057	within coordinates
Tssr89922	transcription start site region 89922	102 bp upstream