rs52471342 SNP Detail

Summary

• ID
  rs52471342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96241329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAAAAATCTT CCCCCAGCCG ACTTTTCATT TTCAGCTTTG
  AGGCCTAGTT TCCCACCAAT TTGCTTGTGG CTCTGAGGTT TTTTTGTTTT TGGTTTTTTT
  K
  TTTTTTTTTT TTTTTTTTGT TGTTTTTTGC CTCCTTCCTC TAGTAAATCA CAATATTCTA
  AAATTGAGCC CATCATAGGT GCCTCACCAT AGAATACATT A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132677015	ENSMUSSNP2437967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52471342					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96241329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1509 bp proximal
Hoxb2	homeobox B2	1129 bp upstream
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	55 bp distal
Rr454	regulatory region 454	283 bp distal
Rr455383	regulatory region 455383	428 bp distal
Rr455384	regulatory region 455384	35 bp distal
Rr455385	regulatory region 455385	638 bp proximal
Tssr104519	transcription start site region 104519	1093 bp upstream
Tssr104520	transcription start site region 104520	1366 bp upstream
Tssr104521	transcription start site region 104521	1395 bp upstream
Tssr104522	transcription start site region 104522	1447 bp upstream
Tssr104523	transcription start site region 104523	1471 bp upstream
Tssr104524	transcription start site region 104524	1551 bp upstream
Tssr104525	transcription start site region 104525	1617 bp upstream
Tssr110331	transcription start site region 110331	376 bp upstream
Tssr110332	transcription start site region 110332	304 bp upstream