rs52471938 SNP Detail

Summary

• ID
  rs52471938
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12849657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACATCA GACTGGGGTT
  AATATCTGAA ATATATAAAG AATTGTAAAA ATTAAATACT CCAAGCTAAA TTATCCAATT
  AATAAATGGG CTAATGAACT GTCTGCTCTT CCAGGGGACC GGAGTGTGAT CTCCAGCTCC
  TACATGGAAA AAAATAAACA GAAATAAAAA AGAAAAAGAA GAAATCTCAA ATTAAAAAAA
  M
  CAAATTTTTT AGAACTTTAT TTATTTTCCC ACTCATGATT CTCATGAAGT TTAGAAAATG
  AATGGAAGAC ATTATATTAT TTTGGAGTTG GTTAAATTTC ACCCTTGTCT ACAGTTCTGG
  AAATTATACC ATTTTAAATT TTAACAAAAT TTTAACAAAA GTTTCAATAA ATGAAAACAT
  TCTCTTGGTG TATTTGCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806575	ENSMUSSNP6432360	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52471938					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12849657 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	892 bp upstream
Tssr92373	transcription start site region 92373	1790 bp upstream
Tssr96740	transcription start site region 96740	769 bp downstream
Tssr96741	transcription start site region 96741	1682 bp downstream