rs52472368 SNP Detail

Summary

• ID
  rs52472368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151246915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagcactgt ctgctcttcc agaggtcctg
  agttcaattc ccagtaacca catggtggct cacaaccatc tgtaatggga tctgatgccc
  tcttcaggtg tgtctgaaga cagctacagt gtactcatat atatatataa aataaaaaat
  W
  ttttaaagaG GTTTGATTTA GGAAAAGGTT TGAATTAACG GTATTTCTGT CCCTTCCTCT
  TCCCTtcact cactcactca ctcactcatt cattcattca ttcCTTTTCT TCCTCCCTCC
  CCACCTCCTT AGGTTCCAGG AATTCCACTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145718929	ENSMUSSNP5175933	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		A
ss320055956	CHEV_1_153218294	CHEVERUD	SCREENING_POP	f	SNP				T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52472368					SNP	T	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151246915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			406 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant