rs52472562 SNP Detail

Summary

• ID
  rs52472562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACACAGA GATCAGGGAT
  TACCAATTGG GATTATCTGA TGGAAATATA TATACTCTTC AAGACAAGAA ATAAACTATT
  TTCACCTCTT CTGAGGGGGT GGGGGTGGGG GGGACACAGA CTAGCATGGT AATTACTCAC
  AGCACTGAAT CCTCCTTCCC TGTGAATTTT TGGGTAGCAT TTGGCATGGC TGACATTTTT
  W
  AAAATATTTT TTATTATTAT GTATTTTCCT CAATTACATT TAGAATGCTA TCCCAAAAGT
  CCCCCATACC CTCCCCCCCA CTTCCCTACC CACCCATTCC CATTTTTTTG GCCCTGGCAT
  TCCCCTGTAC TGGGGCATAT AAAGTTTGCG TGTCCAATGG GCCTCTCTTT CCACTGACAT
  TTTAAGGCAG ATAATACTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135874316	ENSMUSSNP5966244	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320957936	CHEV_3_127593621	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52472562					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684352 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	779 bp distal
Rr584893	regulatory region 584893	382 bp distal
Rr584894	regulatory region 584894	93 bp proximal