rs52472614 SNP Detail

Summary

• ID
  rs52472614
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAGCACA TGGGAGGCAG AGGCAGAAGG TTATCCTCAA
  CTATAAAGCA AGTTTGAGGC CAGCCCAGGA TATATGAGAC CCTGCTTCAA AAAACAAATT
  W
  AAAAAAAGGA GGAGGAAGAG GAGGAGGAGA GGACGATGAC AAAAAACCCT CATCACTGGG
  AAGATATAGT TCATTGCTAG AGCTTGTTTA GCAAGGTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145493385	ENSMUSSNP3218941	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss325366950	CHEV_17_33776440	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52472614					SNP	A	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858469 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Rr525901	regulatory region 525901	309 bp proximal
Tssr143785	transcription start site region 143785	1683 bp downstream
Tssr143786	transcription start site region 143786	1665 bp downstream
Tssr143787	transcription start site region 143787	1385 bp downstream
Tssr143788	transcription start site region 143788	1372 bp downstream
Tssr143789	transcription start site region 143789	1354 bp downstream
Tssr143790	transcription start site region 143790	1704 bp upstream
Tssr147440	transcription start site region 147440	416 bp downstream