rs52473146 SNP Detail

Summary

• ID
  rs52473146
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAAACAAA ACAAATAACA ACAAAACCAA TAAAAATTGT
  AAGCCTCAGC GTAACAGACA CAAACAACTG GACTGAAAGG AGAAGCGCTA AAGTTGGTTA
  T
  CCAGCATTAG CTCTCGAGAA ACATCAACCA TTTTCTTACC TATGGTTACA TCTCCTCTGA
  TTTCGCTTTC TACACACACT ACTGCTCCGG GAGCAATCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149092859	ENSMUSSNP4007923	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322575033	CHEV_8_35169356	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52473146					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1813 bp proximal
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	601 bp proximal
Rr661953	regulatory region 661953	1033 bp proximal
Rr661954	regulatory region 661954	1540 bp proximal
Rr661955	regulatory region 661955	1549 bp proximal
Tssr80889	transcription start site region 80889	1460 bp downstream
Tssr80890	transcription start site region 80890	1514 bp downstream