rs52473408 SNP Detail

Summary

• ID
  rs52473408
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108541177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTCTT GACAGAGAGG
  ATTTTCCTTT GCAGTATAAA CCAAACCCAT GGCTGACCAC TGTCCTTTTG ACCTCGGAAA
  GCTGGGTGGT TACCAACTAA AAGCTGATGC TTTTGTGATT TGGTGTTTGT TTTTGTATTT
  GTTTTTATTT GTGTTTTTTT TCCCCTTTGA AGACACAGTC TCATGTATCC AATGCTGGCC
  W
  AAAACTCAAA ATGAAGCAAT TAACCTTGAA TTTCTGCCCT CCTGCCTCCC AGGTACTTGA
  AGGTTCTTTC AAGGTTTCAA AGAAACTAAG CCTTGGCCCC TATGTCCTGG TCAGTAAGAA
  TTGCCACACT TTAGAACTGG GGCGGGGAAA ACATTTTACA GACAGTAGTG TTGGAGCAGG
  CATTGAAAAG CTGGCTGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61448816	NES16836377	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52473408					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61448816	NES16836377	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108541177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	1606 bp distal
Rr401686	regulatory region 401686	1791 bp downstream
Rr686857	regulatory region 686857	1870 bp distal
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	within coordinates
Tssr87151	transcription start site region 87151	1885 bp downstream
Tssr87152	transcription start site region 87152	1759 bp downstream