rs52474236 SNP Detail

Summary

• ID
  rs52474236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:6805694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  TTGAAAAACT AAGGAGGAAT GAGTGTAGAC AGTACTAAAG GATGATAATT GATACTGCCT
  TCTGCTTCCC TTATACATAT ACATGCATCT GCACATACCT GTACACATGT GTATATGTAC
  ACACATTGAG AGAGAGAAAG AGGGGTGGGA GAACCAAGAA GGAGATGGAA GGAGGGAGGG
  R
  GAGATGGAAG GAGGGAGGGG GAGATGGAAG AAGAGAGGAC AGAAGATAAA GAAATCCTAC
  TTGAGCTAAA GGAAAGATAT ATGTGAGGTC AGTTTGGGAG AATGAGGAAG AAGATGATTG
  ACAAATCTGT GTCCATATTT TAAAAAGAGA CAAAAGGAGA CAGAGAAGGG AAGAAAGGCG
  TGTACATCCT ACATTGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147788463	ENSMUSSNP7088464	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325101921	CHEV_16_6987923	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52474236					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:6805694 () rs orientation: forward

Symbol	Name	Function Class
Rbfox1	RNA binding protein, fox-1 homolog (C. elegans) 1	within coordinates
Rr511178	regulatory region 511178	1344 bp distal
Tssr136955	transcription start site region 136955	1122 bp downstream