rs52474361 SNP Detail

Summary

• ID
  rs52474361
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85434441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC CTGCATGCAG GGCTGGGGTG
  T
  GGGGCGACCT GGGGCCGACT CCCTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145392383	ENSMUSSNP7215637	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322751409	CHEV_8_87231711	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52474361					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85434441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20709	CpG island 20709	1862 bp distal
Cpgi20710	CpG island 20710	609 bp distal
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	1160 bp proximal
Rr187001	regulatory region 187001	within coordinates
Rr187002	regulatory region 187002	959 bp proximal
Tssr78440	transcription start site region 78440	813 bp upstream
Tssr82121	transcription start site region 82121	1985 bp upstream
Tssr82122	transcription start site region 82122	1752 bp upstream
Tssr82123	transcription start site region 82123	1603 bp upstream
Tssr82124	transcription start site region 82124	1558 bp upstream
Tssr82125	transcription start site region 82125	1484 bp upstream
Tssr82126	transcription start site region 82126	1296 bp upstream
Tssr82127	transcription start site region 82127	693 bp downstream