rs52474462 SNP Detail

Summary

• ID
  rs52474462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127757535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAATGGT ACCTAAGTAT
  ATGATTGTGA GTGGAAACAT AGGGAACAGA ATCCGGTATT GGCAGTTTCT CCACATTCAT
  TTGTATGTGA ATCTTTAATA TAAATGACAG GTATGAAGCA CAAATGCCAA GCAAAATGTT
  TCAGTGAATA CATTTTTTTT TTTTTTTTGG TTTTTGGTTT TTCTTTTTTT AAAAGATTTA
  Y
  TTATTATTAT ACATAAGTAC ACTGTAGCTG TCTTCAGACA CACCAGAAGA GGGCGTCAGA
  TCTCATTACG GATGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT CAGGACCTCT
  GGAAGAGCAG TCAGTGCTCT TACCCACTGA GCCATCTCGC CAGCCCCAGT GAACACATTT
  CAACAGTTGA ATTTTATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737482	ENSMUSSNP5879914	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52474462					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127757535 () rs orientation: forward

Symbol	Name	Function Class
Gm15905	predicted gene 15905	300 bp downstream
Gm40804	predicted gene, 40804	within coordinates