rs52474716 SNP Detail

Summary

• ID
  rs52474716
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172185614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAACAGT CTTACAAGAG
  GAACTCTTAG GGTGTCTTCA ATTTACAAGC GAAAAGGTGA AGCTCAGAGA GGCTGAGCCA
  CTGACTCCAG GTCACACAGC TGGAGTTGCA GGACCAATGT GACTGAGGAC TATACCTTTA
  TTTTTTTTTG GAGGGGGGGG TTCGAGACAG GGTTTCTCTG TGGCTGACCT AGAACTCACT
  C
  TGTAGACCAG GCTGGCCTCG AACTCAGAGA TCCACCTGCC TCTGCCTCCC AAGTGCTGGG
  ATTAAAGGCA TGCGCCACCA CGCCCGGCTT AGGACTATAC CTTTAACTCA TCTTTATAGC
  TTGAACACCC TGAGCAGAAG CAGTCCACAC AGGATCAGTC TGCCTCCTTC AGACACTGGT
  ACCGGACTAC CACAAACAGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148313902	ENSMUSSNP2877330	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52474716					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172185614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1621 bp proximal
Fam210b	family with sequence similarity 210, member B	1871 bp upstream
Rr48055	regulatory region 48055	1614 bp distal
Rr56171	regulatory region 56171	1186 bp proximal
Tssr21944	transcription start site region 21944	1885 bp upstream
Tssr21945	transcription start site region 21945	1901 bp upstream
Tssr21946	transcription start site region 21946	1934 bp upstream
Tssr27939	transcription start site region 27939	1976 bp downstream