rs52475960 SNP Detail

Summary

• ID
  rs52475960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGGCAC AAGTTGACCC
  CCAACACAAA CACATACACA CTAGAGGTGG AGGAGAGAAG AAAGGGGGGG TAGGTGGAGA
  CAAAGACAGA TATATAGGAA AGCTTGGTCT GAACCTGACA CCTCAGTGGG AGGTGTTAGA
  GCTCTGGAAG GTGAGACCTG GCTAGAGATG AAAGTGTGTT GGTGGTAAGC CTCTGAAGTT
  R
  GCCCTGACAC CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCGTGT GCGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTCTGTTT ATGTGTATGC CTGTGTCTCT GTGAGTGTGT
  CTTTCTGTGT GTCTCTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460794	NES16446388	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52475960					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460794	NES16446388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593276 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	920 bp upstream
Rr404848	regulatory region 404848	1058 bp upstream
Rr516712	regulatory region 516712	606 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	815 bp proximal
Rr516715	regulatory region 516715	931 bp proximal
Tssr138714	transcription start site region 138714	73 bp downstream
Tssr141333	transcription start site region 141333	1219 bp upstream
Tssr141334	transcription start site region 141334	1065 bp upstream
Tssr141335	transcription start site region 141335	128 bp upstream